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diff_tables.py
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"""Provides classes for performing a table diff
"""
import re
import time
from abc import ABC, abstractmethod
from enum import Enum
from contextlib import contextmanager
from operator import methodcaller
from typing import Iterable, Tuple, Iterator, Optional
from concurrent.futures import ThreadPoolExecutor, as_completed
from runtype import dataclass
from dataclasses import field
from data_diff.info_tree import InfoTree, SegmentInfo
from .utils import run_as_daemon, safezip, getLogger
from .thread_utils import ThreadedYielder
from .table_segment import TableSegment
from .tracking import create_end_event_json, create_start_event_json, send_event_json, is_tracking_enabled
from .sqeleton.abcs import IKey
logger = getLogger(__name__)
class Algorithm(Enum):
AUTO = "auto"
JOINDIFF = "joindiff"
HASHDIFF = "hashdiff"
DiffResult = Iterator[Tuple[str, tuple]] # Iterator[Tuple[Literal["+", "-"], tuple]]
def truncate_error(error: str):
first_line = error.split("\n", 1)[0]
return re.sub("'(.*?)'", "'***'", first_line)
@dataclass
class ThreadBase:
"Provides utility methods for optional threading"
threaded: bool = True
max_threadpool_size: Optional[int] = 1
def _thread_map(self, func, iterable):
if not self.threaded:
return map(func, iterable)
with ThreadPoolExecutor(max_workers=self.max_threadpool_size) as task_pool:
return task_pool.map(func, iterable)
def _threaded_call(self, func, iterable):
"Calls a method for each object in iterable."
return list(self._thread_map(methodcaller(func), iterable))
def _thread_as_completed(self, func, iterable):
if not self.threaded:
yield from map(func, iterable)
return
with ThreadPoolExecutor(max_workers=self.max_threadpool_size) as task_pool:
futures = [task_pool.submit(func, item) for item in iterable]
for future in as_completed(futures):
yield future.result()
def _threaded_call_as_completed(self, func, iterable):
"Calls a method for each object in iterable. Returned in order of completion."
return self._thread_as_completed(methodcaller(func), iterable)
@contextmanager
def _run_in_background(self, *funcs):
with ThreadPoolExecutor(max_workers=self.max_threadpool_size) as task_pool:
futures = [task_pool.submit(f) for f in funcs if f is not None]
yield futures
for f in futures:
f.result()
@dataclass
class DiffStats:
diff_by_sign: dict[str, int]
table1_count: int
table2_count: int
unchanged: int
diff_percent: float
@dataclass
class DiffResultWrapper:
diff: iter # DiffResult
info_tree: InfoTree
stats: dict
result_list: list = field(default_factory=list)
def __iter__(self):
for i in self.diff:
self.result_list.append(i)
yield i
def _get_stats(self) -> DiffStats:
diff_by_key = {}
if len(self.result_list) > 0:
for sign, values in self.result_list:
k = values[: len(self.info_tree.info.tables[0].key_columns)]
if k in diff_by_key:
assert sign != diff_by_key[k]
diff_by_key[k] = "!"
else:
diff_by_key[k] = sign
diff_by_sign = {k: 0 for k in "+-!"}
for sign in diff_by_key.values():
diff_by_sign[sign] += 1
table1_count = self.info_tree.info.rowcounts[1]
table2_count = self.info_tree.info.rowcounts[2]
unchanged = table1_count - diff_by_sign["-"] - diff_by_sign["!"]
diff_percent = 1 - unchanged / max(table1_count, table2_count)
else:
raise RuntimeError(
"result_list is empty, consume the diff iterator to populate values: e.g. \ndiff_iter = diff_tables(...) \ndiff_list = list(diff_iter) \ndiff_iter.print_stats(json_output)"
)
return DiffStats(diff_by_sign, table1_count, table2_count, unchanged, diff_percent)
def get_stats_string(self):
diff_stats = self._get_stats()
string_output = ""
string_output += f"{diff_stats.table1_count} rows in table A\n"
string_output += f"{diff_stats.table2_count} rows in table B\n"
string_output += f"{diff_stats.diff_by_sign['-']} rows exclusive to table A (not present in B)\n"
string_output += f"{diff_stats.diff_by_sign['+']} rows exclusive to table B (not present in A)\n"
string_output += f"{diff_stats.diff_by_sign['!']} rows updated\n"
string_output += f"{diff_stats.unchanged} rows unchanged\n"
string_output += f"{100*diff_stats.diff_percent:.2f}% difference score\n"
if self.stats:
string_output += "\nExtra-Info:\n"
for k, v in sorted(self.stats.items()):
string_output += f" {k} = {v}\n"
return string_output
def get_stats_dict(self):
diff_stats = self._get_stats()
json_output = {
"rows_A": diff_stats.table1_count,
"rows_B": diff_stats.table2_count,
"exclusive_A": diff_stats.diff_by_sign["-"],
"exclusive_B": diff_stats.diff_by_sign["+"],
"updated": diff_stats.diff_by_sign["!"],
"unchanged": diff_stats.unchanged,
"total": sum(diff_stats.diff_by_sign.values()),
"stats": self.stats,
}
return json_output
class TableDiffer(ThreadBase, ABC):
bisection_factor = 32
stats: dict = {}
def diff_tables(self, table1: TableSegment, table2: TableSegment, info_tree: InfoTree = None) -> DiffResultWrapper:
"""Diff the given tables.
Parameters:
table1 (TableSegment): The "before" table to compare. Or: source table
table2 (TableSegment): The "after" table to compare. Or: target table
Returns:
An iterator that yield pair-tuples, representing the diff. Items can be either -
('-', row) for items in table1 but not in table2.
('+', row) for items in table2 but not in table1.
Where `row` is a tuple of values, corresponding to the diffed columns.
"""
if info_tree is None:
info_tree = InfoTree(SegmentInfo([table1, table2]))
return DiffResultWrapper(self._diff_tables_wrapper(table1, table2, info_tree), info_tree, self.stats, [])
def _diff_tables_wrapper(self, table1: TableSegment, table2: TableSegment, info_tree: InfoTree) -> DiffResult:
if is_tracking_enabled():
options = dict(self)
options["differ_name"] = type(self).__name__
event_json = create_start_event_json(options)
run_as_daemon(send_event_json, event_json)
start = time.monotonic()
error = None
try:
# Query and validate schema
table1, table2 = self._threaded_call("with_schema", [table1, table2])
self._validate_and_adjust_columns(table1, table2)
yield from self._diff_tables_root(table1, table2, info_tree)
except BaseException as e: # Catch KeyboardInterrupt too
error = e
finally:
info_tree.aggregate_info()
if is_tracking_enabled():
runtime = time.monotonic() - start
rowcounts = info_tree.info.rowcounts
table1_count = rowcounts[1] if rowcounts else None
table2_count = rowcounts[2] if rowcounts else None
diff_count = info_tree.info.diff_count
err_message = truncate_error(repr(error))
event_json = create_end_event_json(
error is None,
runtime,
table1.database.name,
table2.database.name,
table1_count,
table2_count,
diff_count,
err_message,
)
send_event_json(event_json)
if error:
raise error
def _validate_and_adjust_columns(self, table1: TableSegment, table2: TableSegment) -> DiffResult:
pass
def _diff_tables_root(self, table1: TableSegment, table2: TableSegment, info_tree: InfoTree) -> DiffResult:
return self._bisect_and_diff_tables(table1, table2, info_tree)
@abstractmethod
def _diff_segments(
self,
ti: ThreadedYielder,
table1: TableSegment,
table2: TableSegment,
info_tree: InfoTree,
max_rows: int,
level=0,
segment_index=None,
segment_count=None,
):
...
def _bisect_and_diff_tables(self, table1, table2, info_tree):
if len(table1.key_columns) > 1:
raise NotImplementedError("Composite key not supported yet!")
if len(table2.key_columns) > 1:
raise NotImplementedError("Composite key not supported yet!")
if len(table1.key_columns) != len(table2.key_columns):
raise ValueError("Tables should have an equivalent number of key columns!")
(key1,) = table1.key_columns
(key2,) = table2.key_columns
key_type = table1._schema[key1]
key_type2 = table2._schema[key2]
if not isinstance(key_type, IKey):
raise NotImplementedError(f"Cannot use column of type {key_type} as a key")
if not isinstance(key_type2, IKey):
raise NotImplementedError(f"Cannot use column of type {key_type2} as a key")
if key_type.python_type is not key_type2.python_type:
raise TypeError(f"Incompatible key types: {key_type} and {key_type2}")
# Query min/max values
key_ranges = self._threaded_call_as_completed("query_key_range", [table1, table2])
# Start with the first completed value, so we don't waste time waiting
min_key1, max_key1 = self._parse_key_range_result(key_type, next(key_ranges))
table1, table2 = [t.new(min_key=min_key1, max_key=max_key1) for t in (table1, table2)]
logger.info(
f"Diffing segments at key-range: {table1.min_key}..{table2.max_key}. "
f"size: table1 <= {table1.approximate_size()}, table2 <= {table2.approximate_size()}"
)
ti = ThreadedYielder(self.max_threadpool_size)
# Bisect (split) the table into segments, and diff them recursively.
ti.submit(self._bisect_and_diff_segments, ti, table1, table2, info_tree)
# Now we check for the second min-max, to diff the portions we "missed".
min_key2, max_key2 = self._parse_key_range_result(key_type, next(key_ranges))
if min_key2 < min_key1:
pre_tables = [t.new(min_key=min_key2, max_key=min_key1) for t in (table1, table2)]
ti.submit(self._bisect_and_diff_segments, ti, *pre_tables, info_tree)
if max_key2 > max_key1:
post_tables = [t.new(min_key=max_key1, max_key=max_key2) for t in (table1, table2)]
ti.submit(self._bisect_and_diff_segments, ti, *post_tables, info_tree)
return ti
def _parse_key_range_result(self, key_type, key_range):
mn, mx = key_range
cls = key_type.make_value
# We add 1 because our ranges are exclusive of the end (like in Python)
try:
return cls(mn), cls(mx) + 1
except (TypeError, ValueError) as e:
raise type(e)(f"Cannot apply {key_type} to '{mn}', '{mx}'.") from e
def _bisect_and_diff_segments(
self,
ti: ThreadedYielder,
table1: TableSegment,
table2: TableSegment,
info_tree: InfoTree,
level=0,
max_rows=None,
):
assert table1.is_bounded and table2.is_bounded
# Choose evenly spaced checkpoints (according to min_key and max_key)
biggest_table = max(table1, table2, key=methodcaller("approximate_size"))
checkpoints = biggest_table.choose_checkpoints(self.bisection_factor - 1)
# Create new instances of TableSegment between each checkpoint
segmented1 = table1.segment_by_checkpoints(checkpoints)
segmented2 = table2.segment_by_checkpoints(checkpoints)
# Recursively compare each pair of corresponding segments between table1 and table2
for i, (t1, t2) in enumerate(safezip(segmented1, segmented2)):
info_node = info_tree.add_node(t1, t2, max_rows=max_rows)
ti.submit(
self._diff_segments, ti, t1, t2, info_node, max_rows, level + 1, i + 1, len(segmented1), priority=level
)