This repository was archived by the owner on May 17, 2024. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 305
Expand file tree
/
Copy pathtable_segment.py
More file actions
211 lines (161 loc) · 8.31 KB
/
table_segment.py
File metadata and controls
211 lines (161 loc) · 8.31 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
import time
from typing import List, Tuple
import logging
from runtype import dataclass
from sqeleton.utils import ArithString, split_space
from sqeleton.databases import Database, DbPath, DbKey, DbTime
from sqeleton.schema import Schema, create_schema
from sqeleton.queries import Count, Checksum, SKIP, table, this, Expr, min_, max_, Code
from sqeleton.queries.extras import ApplyFuncAndNormalizeAsString, NormalizeAsString
logger = logging.getLogger("table_segment")
RECOMMENDED_CHECKSUM_DURATION = 20
def split_key_space(min_key: DbKey, max_key: DbKey, count: int):
if max_key - min_key <= count:
count = 1
if isinstance(min_key, ArithString):
assert type(min_key) is type(max_key)
checkpoints = min_key.range(max_key, count)
else:
checkpoints = split_space(min_key, max_key, count)
assert all(min_key < x < max_key for x in checkpoints)
return [min_key] + checkpoints + [max_key]
@dataclass
class TableSegment:
"""Signifies a segment of rows (and selected columns) within a table
Parameters:
database (Database): Database instance. See :meth:`connect`
table_path (:data:`DbPath`): Path to table in form of a tuple. e.g. `('my_dataset', 'table_name')`
key_columns (Tuple[str]): Name of the key column, which uniquely identifies each row (usually id)
update_column (str, optional): Name of updated column, which signals that rows changed.
Usually updated_at or last_update. Used by `min_update` and `max_update`.
extra_columns (Tuple[str, ...], optional): Extra columns to compare
min_key (:data:`DbKey`, optional): Lowest key value, used to restrict the segment
max_key (:data:`DbKey`, optional): Highest key value, used to restrict the segment
min_update (:data:`DbTime`, optional): Lowest update_column value, used to restrict the segment
max_update (:data:`DbTime`, optional): Highest update_column value, used to restrict the segment
where (str, optional): An additional 'where' expression to restrict the search space.
case_sensitive (bool): If false, the case of column names will adjust according to the schema. Default is true.
"""
# Location of table
database: Database
table_path: DbPath
# Columns
key_columns: Tuple[str, ...]
update_column: str = None
extra_columns: Tuple[str, ...] = ()
# Restrict the segment
min_key: DbKey = None
max_key: DbKey = None
min_update: DbTime = None
max_update: DbTime = None
where: str = None
case_sensitive: bool = True
_schema: Schema = None
def __post_init__(self):
if not self.update_column and (self.min_update or self.max_update):
raise ValueError("Error: the min_update/max_update feature requires 'update_column' to be set.")
if self.min_key is not None and self.max_key is not None and self.min_key >= self.max_key:
raise ValueError(f"Error: min_key expected to be smaller than max_key! ({self.min_key} >= {self.max_key})")
if self.min_update is not None and self.max_update is not None and self.min_update >= self.max_update:
raise ValueError(
f"Error: min_update expected to be smaller than max_update! ({self.min_update} >= {self.max_update})"
)
def _where(self):
return f"({self.where})" if self.where else None
def _with_raw_schema(self, raw_schema: dict) -> "TableSegment":
schema = self.database._process_table_schema(self.table_path, raw_schema, self.relevant_columns, self._where())
return self.new(_schema=create_schema(self.database, self.table_path, schema, self.case_sensitive))
def with_schema(self) -> "TableSegment":
"Queries the table schema from the database, and returns a new instance of TableSegment, with a schema."
if self._schema:
return self
return self._with_raw_schema(self.database.query_table_schema(self.table_path))
def get_schema(self):
return self.database.query_table_schema(self.table_path)
def _make_key_range(self):
if self.min_key is not None:
assert len(self.key_columns) == 1
(k,) = self.key_columns
yield self.min_key <= this[k]
if self.max_key is not None:
assert len(self.key_columns) == 1
(k,) = self.key_columns
yield this[k] < self.max_key
def _make_update_range(self):
if self.min_update is not None:
yield self.min_update <= this[self.update_column]
if self.max_update is not None:
yield this[self.update_column] < self.max_update
@property
def source_table(self):
return table(*self.table_path, schema=self._schema)
def make_select(self):
return self.source_table.where(
*self._make_key_range(), *self._make_update_range(), Code(self._where()) if self.where else SKIP
)
def get_values(self) -> list:
"Download all the relevant values of the segment from the database"
select = self.make_select().select(*self._relevant_columns_repr)
return self.database.query(select, List[Tuple])
def choose_checkpoints(self, count: int) -> List[DbKey]:
"Suggests a bunch of evenly-spaced checkpoints to split by, including start, end."
assert self.is_bounded
return split_key_space(self.min_key, self.max_key, count)
def segment_by_checkpoints(self, checkpoints: List[DbKey]) -> List["TableSegment"]:
"Split the current TableSegment to a bunch of smaller ones, separated by the given checkpoints"
if self.min_key and self.max_key:
assert all(self.min_key <= c <= self.max_key for c in checkpoints)
# Calculate sub-segments
ranges = list(zip(checkpoints[:-1], checkpoints[1:]))
# Create table segments
tables = [self.new(min_key=s, max_key=e) for s, e in ranges]
return tables
def new(self, **kwargs) -> "TableSegment":
"""Using new() creates a copy of the instance using 'replace()'"""
return self.replace(**kwargs)
@property
def relevant_columns(self) -> List[str]:
extras = list(self.extra_columns)
if self.update_column and self.update_column not in extras:
extras = [self.update_column] + extras
return list(self.key_columns) + extras
@property
def _relevant_columns_repr(self) -> List[Expr]:
return [NormalizeAsString(this[c]) for c in self.relevant_columns]
def count(self) -> int:
"""Count how many rows are in the segment, in one pass."""
return self.database.query(self.make_select().select(Count()), int)
def count_and_checksum(self) -> Tuple[int, int]:
"""Count and checksum the rows in the segment, in one pass."""
start = time.monotonic()
q = self.make_select().select(Count(), Checksum(self._relevant_columns_repr))
count, checksum = self.database.query(q, tuple)
duration = time.monotonic() - start
if duration > RECOMMENDED_CHECKSUM_DURATION:
logger.warning(
"Checksum is taking longer than expected (%.2f). "
"We recommend increasing --bisection-factor or decreasing --threads.",
duration,
)
if count:
assert checksum, (count, checksum)
return count or 0, int(checksum) if count else None
def query_key_range(self) -> Tuple[int, int]:
"""Query database for minimum and maximum key. This is used for setting the initial bounds."""
# Normalizes the result (needed for UUIDs) after the min/max computation
(k,) = self.key_columns
select = self.make_select().select(
ApplyFuncAndNormalizeAsString(this[k], min_),
ApplyFuncAndNormalizeAsString(this[k], max_),
)
min_key, max_key = self.database.query(select, tuple)
if min_key is None or max_key is None:
raise ValueError("Table appears to be empty")
return min_key, max_key
@property
def is_bounded(self):
return self.min_key is not None and self.max_key is not None
def approximate_size(self):
if not self.is_bounded:
raise RuntimeError("Cannot approximate the size of an unbounded segment. Must have min_key and max_key.")
return self.max_key - self.min_key